PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G141500.1.p
Common NameSb09g020690, SORBIDRAFT_09g020690
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 219aa    MW: 21803.1 Da    PI: 9.5609
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G141500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.7e-152676155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++y+GVr++  +g+Wv+eIr+p +   r r +lg++  +e Aa a++aa+  l+g
  Sobic.009G141500.1.p 26 CRYRGVRRRA-WGKWVSEIRVPGT---RERLWLGSYAAPEAAAVAHDAAACLLRG 76
                          78*****777.**********943...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-82676IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-162780IPR016177DNA-binding domain
PROSITE profilePS5103220.2572790IPR001471AP2/ERF domain
SMARTSM003806.4E-252796IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-252791IPR001471AP2/ERF domain
PRINTSPR003678.8E-82839IPR001471AP2/ERF domain
PRINTSPR003678.8E-85066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSRAASGGGA GTGRGGGGGA ERAHRCRYRG VRRRAWGKWV SEIRVPGTRE RLWLGSYAAP  60
EAAAVAHDAA ACLLRGGGGR AAGQAHLNFP DRAACYIVYG GSHGHGPPLS PRSVQRVASD  120
AGMAADAQIV DARAAAAALA APTTRVQPAA FAGIGAAQGG AQGAACAPPP YSDGASSSSS  180
STYWSTPSAS ASRTSSSTGS EQPLVFGDIS VDDIEILV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G141500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441116.11e-150dehydration-responsive element-binding protein 1H
TrEMBLC5YY621e-149C5YY62_SORBI; Uncharacterized protein
STRINGSb09g020690.11e-150(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.12e-14ERF family protein