PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.009G152100.2.p

Common Name

Sb09g021580, SORBIDRAFT_09g021580

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 261aa MW: 26897.1 Da PI: 7.4247

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.009G152100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.7	5.1e-13	188	233	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r++r++kNRe+A rsR RK+a+++eLe v +Le+e +L e e Sobic.009G152100.2.p 188 QRQKRMIKNRESAARSRDRKQAYVAELESQVMQLEEEQAELLREQE 233 89************************************99987654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.8E-8	184	252	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.53	186	238	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-11	187	233	IPR004827	Basic-leucine zipper domain
CDD	cd14707	4.18E-17	188	233	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.4E-13	189	244	No hit	No description
SuperFamily	SSF57959	1.2E-10	189	237	No hit	No description
PROSITE pattern	PS00036	0	191	206	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MASSRVMASS SPPQHGAGSS SSDLARFRSS SGIGSMNMDD IIRNIYGPDA VNAAAGAGPA 60 EPSPAAAAAA PEAAAAAVAR RTSEEVWKEI SAAGGLSAPV LLPPPPAACS GTGGSRGGAA 120 EMTLEDFLAR DSCARAAVLE GNMALGFPDA DGGDAAGSGV AGGVGVGGGR GSTRKRALLD 180 PADRAVMQRQ KRMIKNRESA ARSRDRKQAY VAELESQVMQ LEEEQAELLR EQEDRRQNRL 240 KEMISVRNKF SASLFNFHAI *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.13060	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00648	PBM	Transfer from LOC_Os05g36160	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.009G152100.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021304113.1	0.0	bZIP transcription factor 23 isoform X2
Swissprot	Q0JHF1	9e-45	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A1Z5R3Y7	0.0	A0A1Z5R3Y7_SORBI; Uncharacterized protein
STRING	Sb09g021580.1	1e-117	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	2e-12	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.009G152100.2.p
Entrez Gene	8058517

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]