PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.009G153400.1.p

Common Name

Dof25, Sb09g021690, SORBIDRAFT_09g021690

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 367aa MW: 38488.3 Da PI: 5.9847

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.009G153400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120	8.8e-38	67	121	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Sobic.009G153400.1.p 67 PSCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 121 58***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	48	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	67	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.8E-32	68	121	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	69	105	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MKLSSSSHHL LLESSNLTLS PHHRNTAVVT RMLSSHCENM LPYAPGRRAA VLLDHRRYRP 60 NVVEVAPSCP RCDSPNTKFC YYNNYSLSQP RYFCKGCRRY WTKGGSLRNV PVGGGCRKNR 120 RGKPVVRAVA VDAAVAAASG GASALANRSS SSSPATLRPD LLLEGMIGSP VGLCQPTDDD 180 AAEIPAVVAP EGSTIDLALL YAKFLNHQPA AAAEPCAAAV VPESLDTLSG SSTSGDVSPV 240 VVPPRDQHQP FTTQDHGGFG ELSATTASAE PSAAPPQRPA DDACACAAEA LIGALSVDPR 300 CYDSLGLPPD GGDLVLPSTW HLGTKYEPFD PLPEDAMSLQ DGFAGDEDVW SSALACQGLE 360 AALCRP*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MKLSSSSHHL LLESSNLTLS PHHRNTAVVT RMLSSHCENM LPYAPGRRAA VLLDHRRYRP  60
NVVEVAPSCP RCDSPNTKFC YYNNYSLSQP RYFCKGCRRY WTKGGSLRNV PVGGGCRKNR  120
RGKPVVRAVA VDAAVAAASG GASALANRSS SSSPATLRPD LLLEGMIGSP VGLCQPTDDD  180
AAEIPAVVAP EGSTIDLALL YAKFLNHQPA AAAEPCAAAV VPESLDTLSG SSTSGDVSPV  240
VVPPRDQHQP FTTQDHGGFG ELSATTASAE PSAAPPQRPA DDACACAAEA LIGALSVDPR  300
CYDSLGLPPD GGDLVLPSTW HLGTKYEPFD PLPEDAMSLQ DGFAGDEDVW SSALACQGLE  360
AALCRP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.20287	1e-37	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.009G153400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582416	0.0	KC582416.1 Sorghum bicolor dof25 protein (dof25) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002439872.1	0.0	uncharacterized protein LOC8072499
TrEMBL	C5YYR4	0.0	C5YYR4_SORBI; Dof-type zinc finger protein 25
STRING	Sb09g021690.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	1e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Sobic.009G153400.1.p
Entrez Gene	8072499

Publications ? help Back to Top
Kushwaha H,Gupta S,Singh VK,Rastogi S,Yadav D Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis. Mol. Biol. Rep., 2011. 38(8): p. 5037-53 [PMID:21161392]