PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G164600.1.p
Common NameSb09g022660, SORBIDRAFT_09g022660
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 210aa    MW: 22163 Da    PI: 8.5648
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G164600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000225274123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C+ Cg++F++   L  H  +H
  Sobic.009G164600.1.p 52 FECKTCGRRFPTFQALGGHRASH 74
                          89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.63E-85082No hitNo description
PfamPF139123.9E-135176IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-45183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.115274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0715279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
PfamPF139122.7E-8111134IPR007087Zinc finger, C2H2
SMARTSM003551.1111133IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAETAGVGVD AASVLMLLSR RQQQQQQQQQ GGATTTAELG ARGRGRGRGR VFECKTCGRR  60
FPTFQALGGH RASHRRPKPY YCPYPYGSEP GLRRTRLDEP PHNGECAPRL HGCPICGLEF  120
AVGQALGGHM RRHRTAAAVS GCDELRSGDA NATSVEEADV GAAAGCAGGI CLDLSLAPSE  180
NCVRCRNNAV LGNTAHDARK SLILDCPPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G164600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439925.11e-150zinc finger protein ZAT12
TrEMBLC5YZA61e-149C5YZA6_SORBI; Uncharacterized protein
STRINGSb09g022660.11e-150(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-25C2H2 family protein