PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G170800.1.p
Common NameSb09g023190, SORBIDRAFT_09g023190
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 239aa    MW: 25426.3 Da    PI: 7.3627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G170800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-1866114355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GVr+++ +g+WvAeIr+p   + r kr++lg+f+ +++Aa a+++a+ +++g
  Sobic.009G170800.1.p  66 FRGVRQRR-WGKWVAEIREP---N-RgKRHWLGTFDNPFDAAVAYDRAAVSIHG 114
                           8****998.**********8...3.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.23E-2365122No hitNo description
SMARTSM003801.4E-2965129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2765124IPR001471AP2/ERF domain
PROSITE profilePS5103220.75865123IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-1966124IPR016177DNA-binding domain
PfamPF008471.5E-1066114IPR001471AP2/ERF domain
PRINTSPR003672.6E-76677IPR001471AP2/ERF domain
PRINTSPR003672.6E-788104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGVGLKRQEM WRAAAAAAAA APAPTASAAG RQQAVASNSA TAKPLAERFR PAQRGMGGPD  60
NACHNFRGVR QRRWGKWVAE IREPNRGKRH WLGTFDNPFD AAVAYDRAAV SIHGAHYAHL  120
NFPADHAAAA PAQCHPSSCS AAATTADVFQ EHEAKPRVAA ALGGGAVTVS QQQPQQQGTP  180
WISPDAPFGD DSHDIAMYLD FDAVSDMVPF YPGIKREDCQ HQVFDANAVH SPVWALGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1466123663ATERF1
3gcc_A4e-1466123663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G170800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439946.11e-174dehydration-responsive element-binding protein 2D
SwissprotQ65WX15e-26DRE2D_ORYSJ; Dehydration-responsive element-binding protein 2D
TrEMBLC5YZQ01e-173C5YZQ0_SORBI; Uncharacterized protein
STRINGSb09g023190.11e-173(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-26ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]