PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G172000.3.p
Common NameSb08g016320, SORBIDRAFT_08g016320
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 637aa    MW: 73552.6 Da    PI: 10.0853
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G172000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.79e-096425490
                  FAR1 54 traetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                          + a+ rtgCka++++ + kd+ w++++  +eHnH+l+
  Sobic.009G172000.3.p  6 KAASCRTGCKAMIRLLRLKDHSWYISRSITEHNHSLS 42
                          56789******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-6642IPR004330FAR1 DNA binding domain
PfamPF105511.6E-28164256IPR018289MULE transposase domain
PROSITE profilePS509669.829445479IPR007527Zinc finger, SWIM-type
PfamPF044346.0E-5450478IPR007527Zinc finger, SWIM-type
SMARTSM005756.1E-4454481IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MSRNPKAASC RTGCKAMIRL LRLKDHSWYI SRSITEHNHS LSATCGEKKQ WLSHSEIDPL  60
TKDFIRKLRE NNVTTGRVCN ILGTSRGVGG FPVRREVIRS VCARLAQHNI EDDISKTLTL  120
LDKMKVDDPM MVVRYKVDEG GRIVHMLWCT GKNQQNYDRF GDAMTFDTTY RTNLYNMPFG  180
LFVGVNNHFQ SVVFGGVLLT SEKTEDFEWA FANFKDIMKG KEPMTILTDQ CQGMAAAIKT  240
TLQTSRHRWC KWHVLRKAKQ WLGNVYTKNT GFKSEFNKLV TEEVSIIKFE RRWRQLVRKY  300
GVEKNKYLKR IYKHRGMWAR PYFMHVFCAG MTSTQRSESA NHMLKGFIQR SAPMHIFVSK  360
FNEFQNDRIA QEEKEIHVTK QMKRKRRIGV PIERHAEEIY TRAMYDRLYN ELYHAGSYLI  420
KGRGADEAYI LVHYKEDGAT DEKLFLVKDS GNFISCSCGL YNHVGMLCRH ALKVLMHLDR  480
TELPSGNILA RWRRDVACET GHVSGQGVET SSLESATYIQ KKLMVRRVLA MAGVEGTLDE  540
SGYKEAMDAL DKIISVRTTR VEEKKIELGE RSEKPTSCPK RAVKKGRRQN TSLKSYKASL  600
KEQNKRKKYE EDEISSTSDN EQVTGTRKTK ALWEIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G172000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321752.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5R4170.0A0A1Z5R417_SORBI; Uncharacterized protein
TrEMBLA0A1Z5R4920.0A0A1Z5R492_SORBI; Uncharacterized protein
STRINGSb08g016320.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-71FAR1-related sequence 5