PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G174300.1.p
Common NameSb09g023500, SORBIDRAFT_09g023500
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 236aa    MW: 26622.8 Da    PI: 6.7208
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G174300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY551.6e-17128189259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                           +D ++WrKYG K++  +e+pr YY+C ++   +Cp+kk v++++ + p ++ +t  +eH+++
  Sobic.009G174300.1.p 128 NDHFHWRKYGEKNILYAEYPRLYYKCGYSddhKCPAKKYVQQQSnTYPPLFLVTLINEHTCD 189
                           7**************************998899*******9765156899*********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-19119189IPR003657WRKY domain
SuperFamilySSF1182902.48E-18122189IPR003657WRKY domain
PROSITE profilePS5081114.033122191IPR003657WRKY domain
SMARTSM007742.9E-25127190IPR003657WRKY domain
PfamPF031065.9E-19128189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTLSPPQPPP SSSPRHAAIQ ELRRGTQLAE LLRQQVELIP EPNRRQAAVV NVGEISMAME  60
SSLSILQSEM EHPFVSEVMA APTAYSDGGS TSRERNGPVA RTRRVRHRRG RDGAELPIKE  120
ILTEAPENDH FHWRKYGEKN ILYAEYPRLY YKCGYSDDHK CPAKKYVQQQ SNTYPPLFLV  180
TLINEHTCDT LFRDEPSSSS SGSQVLDFTK ASLSPEEDSS MPVSMHRYSF SYDGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G174300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441265.11e-176WRKY transcription factor 55
TrEMBLC5YZT11e-174C5YZT1_SORBI; Uncharacterized protein
STRINGSb09g023500.11e-175(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Representative plantOGRP1427144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.19e-15WRKY DNA-binding protein 55