PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G175800.1.p
Common NameSb09g023630, SORBIDRAFT_09g023630
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 281aa    MW: 31522.4 Da    PI: 9.8939
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G175800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.4e-19144231196
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+k++++s+v++  +l lp +f++++     +++ ++lede+g +++  +   +++ +  l++GW++F+  ++L+egD++vF+l ++++
  Sobic.009G175800.1.p 144 FVKTMVRSHVSSCFWLGLPTSFCKDNLP--SKEFRMVLEDEEGVEFDAVY--IGNRTG--LSGGWRGFAMHHNLEEGDSLVFELAEHDR 226
                           89*********************99953..35678***************..555444..***********************998788 PP

                           E..EEEE CS
                    B3  90 felvvkv 96 
                           f  ++ +
  Sobic.009G175800.1.p 227 F--KIYI 231
                           8..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-21136233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-24137233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-26142233No hitNo description
SMARTSM010191.1E-21144235IPR003340B3 DNA binding domain
PfamPF023625.0E-18144232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.731144235IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAAKASSAAA AASGAAYEEQ RRKRVLENLK HLEDLGIKEM SKSLLQAARL QKQNKAGVRA  60
SPKARKKFDA TEVRRSSRAK TTVSYKDDFA ELDTFLRGIR RGGGRNTEHG REYTGRISSY  120
QQQQRAFRKA EKLQDSLDPN NPSFVKTMVR SHVSSCFWLG LPTSFCKDNL PSKEFRMVLE  180
DEEGVEFDAV YIGNRTGLSG GWRGFAMHHN LEEGDSLVFE LAEHDRFKIY IIKAIDDDVK  240
EAEPDDKNAS GGTKEEPDQE ESPVAEPPKG AKRRKLRGRR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267273PKGAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G175800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402170.0BT040217.1 Zea mays full-length cDNA clone ZM_BFc0072G10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441275.10.0B3 domain-containing protein Os05g0481400
SwissprotQ5KQI41e-136Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLC5YZU60.0C5YZU6_SORBI; Uncharacterized protein
STRINGSb09g023630.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.19e-48B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]