PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G181900.4.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YC
Protein Properties Length: 241aa    MW: 26948.5 Da    PI: 8.4808
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G181900.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC56.94.8e-186861898
                 NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                          ++++P  rikki++adedv +i+  +Pvl+ska elf+ +l  r++  +  +  +t+  s ++++++  +++dfl+++v +
  Sobic.009G181900.4.p  6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQTYNVYDFLTEVVSK 86
                          5789*************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.6E-24372IPR009072Histone-fold
SuperFamilySSF471136.2E-19488IPR009072Histone-fold
PfamPF008081.2E-16871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITIRKGVK  60
TVGSSHLKQC IQTYNVYDFL TEVVSKVPDI GPSDVIADDK LGKRRKAEED GSEEELKRTR  120
NETESYTSNG RGRGRGRGRG RRGRGAWREV VTTHEQFAEN QSSKLASLKV EVADEVSNAT  180
EAKEATTPCH PKPSCQLQQL APPQPLQDLD HLLQDLDHLF HGQRKEQNSR IFLALGDCLT  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A8e-22272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130139RGRGRGRGRG
2130140RGRGRGRGRGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.157270.0callus| ovary| pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G181900.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9676160.0EU967616.1 Zea mays clone 304857 dr1-associated corepressor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303438.11e-134dr1-associated corepressor homolog
TrEMBLA0A1Z5R4631e-177A0A1Z5R463_SORBI; Uncharacterized protein
STRINGSb09g024220.11e-133(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.16e-54nuclear factor Y, subunit C11