PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G184300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 215aa    MW: 22449.4 Da    PI: 10.6091
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G184300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.3e-194998255
                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GVr ++ +gr++AeIrd +     r +r++lg+++t+ eAa a+++a+ +l+g
  Sobic.009G184300.1.p 49 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDTPVEAAMAYDRAAVALRG 98
                          6********.**********88.....45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.32E-2848105No hitNo description
SMARTSM003806.2E-3449112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-3049106IPR001471AP2/ERF domain
PROSITE profilePS5103221.89149106IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2149106IPR016177DNA-binding domain
PfamPF008472.2E-124998IPR001471AP2/ERF domain
PRINTSPR003671.0E-95061IPR001471AP2/ERF domain
PRINTSPR003671.0E-97288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDWDMRGGGG GHGGAVGDGG GGPGGRGLTV GGVAVGGGGD QHQQRVEAHY RGVRKRPWGR  60
YAAEIRDPWR KTRVWLGTYD TPVEAAMAYD RAAVALRGSK ARLNFTAGRG ACPRATPVQA  120
RPFPLSHPAA PGGHFVGGLD VTHSSPWHVL YLPPSRLHHQ AVAVPPPMPP LVAVAEDVVA  180
SSKPSTALEL RTGPKALPFD LNEPPSLMFG SRSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2049105562ATERF1
3gcc_A2e-2049105562ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.4006e-32ovary
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G184300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441318.21e-151ethylene-responsive transcription factor 12
TrEMBLA0A1B6P9591e-149A0A1B6P959_SORBI; Uncharacterized protein
STRINGGRMZM2G066158_P011e-91(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-29ERF domain protein 12