PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G184400.1.p
Common NameSb09g024400, SORBIDRAFT_09g024400
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 258aa    MW: 25921.1 Da    PI: 8.8103
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G184400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-203484155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++++GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa++ ++g
  Sobic.009G184400.1.p 34 PHFRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAARDYRG 84
                          689*******.**********83...36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.54E-183492No hitNo description
PfamPF008475.6E-143484IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-223593IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-323592IPR001471AP2/ERF domain
SMARTSM003802.8E-363598IPR001471AP2/ERF domain
PROSITE profilePS5103223.7623592IPR001471AP2/ERF domain
PRINTSPR003675.5E-113647IPR001471AP2/ERF domain
PRINTSPR003675.5E-115874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAPRTSEKTM TPAAAAAATG LALSVSGGAG ASGPHFRGVR KRPWGRYAAE IRDPAKKSRV  60
WLGTFDTAEE AARAYDAAAR DYRGPKAKTN FPFPSSCMPL AAGAGAGSLP AAKAVTGGGG  120
SRSSNSSTVE SFSSGSDVQA APMQAMPLPP SLELDLFHRA AAAGTGTGGA AVRFPFNSYP  180
VTHPYYFFGQ AAAAAAAGCH MLKLAPTVTV AAVAQSDSDS SSVVDLSPSP PAAVSTQKAA  240
AAFDLDLNCP PPAEMEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-223193164ATERF1
3gcc_A5e-223193164ATERF1
5wx9_A2e-212897777Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.51720.0callus| embryo| leaf| ovary| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G184400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441319.10.0ethylene-responsive transcription factor 8
TrEMBLC5Z0C20.0C5Z0C2_SORBI; Uncharacterized protein
STRINGSb09g024400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-23erf domain protein 9