PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G191600.1.p
Common NameSb09g025040, SORBIDRAFT_09g025040
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CPP
Protein Properties Length: 360aa    MW: 40038.2 Da    PI: 8.1833
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G191600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.46.8e-1466103340
                   TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           +k+C Ckks+Clk+YC Cf+ g +Cs++C C+ C+Nke
  Sobic.009G191600.1.p  66 CKHCACKKSRCLKLYCPCFSGGGYCSDKCGCQPCFNKE 103
                           89**********************************97 PP
2TCR50.34.8e-16151187339
                   TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                           ++gCnCkks+ClkkYC+C+++g+ Cs  C+C+dC+N 
  Sobic.009G191600.1.p 151 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCDDCQNP 187
                           589*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.9E-1364105IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.70665189IPR005172CRC domain
PfamPF036388.2E-1067103IPR005172CRC domain
SMARTSM011147.7E-15149190IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.5E-11152186IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEATPISVKP PSPALAAPPP ATLGPRDMPT HAVGGTELEP SSMNQLAIAP DPKRQRVEEA  60
ADGNGCKHCA CKKSRCLKLY CPCFSGGGYC SDKCGCQPCF NKEAFSETVQ TTRKVLLSRQ  120
KRMSMKINRR PEANAEPMED AHHSSSSTPP RRGCNCKKSS CLKKYCDCYQ DGTGCSLFCR  180
CDDCQNPFGK NEGIIADDSK RYLYTGADLD HSEGEHDFVV ERSPRLQSPI SKESSFHQTP  240
PHLRVSSRDT HVFPQAISQW QALPRSWQHC ANKRNSNDRV MDDSANYKNS NHDWQLSKHE  300
DSYSISKCVQ ILNGMVELSQ VEKSVAPDVF LQPGNREIFI SLSGDVRAMW LKRKIQHLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-126718612120Protein lin-54 homolog
5fd3_B1e-126718612120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G191600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666400.0BT066640.1 Zea mays full-length cDNA clone ZM_BFb0041G13 mRNA, complete cds.
GenBankEU9682630.0EU968263.1 Zea mays clone 317842 CXC domain containing TSO1-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441351.10.0protein tesmin/TSO1-like CXC 3 isoform X1
TrEMBLC5Z0T20.0C5Z0T2_SORBI; Uncharacterized protein
STRINGSb09g025040.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Representative plantOGRP1200246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.14e-42Tesmin/TSO1-like CXC domain-containing protein