PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G196900.3.p
Common NameSb09g025500, SORBIDRAFT_09g025500
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 576aa    MW: 63169.9 Da    PI: 7.5285
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G196900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.55.9e-2431132199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+lt sd++++g +++p++ ae++       ++ +  s++l+ +d++g +W++++iyr++++r++lt+GW++F + ++L +gD v+F
  Sobic.009G196900.3.p  31 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyeQLRP--SQELIAKDLHGMKWRFRHIYRGQPRRHLLTTGWSSFINKKKLVSGDAVLF 117
                           99****************************9866664..459*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              + s++el+++v+r+
  Sobic.009G196900.3.p 118 L--RGSDGELRLGVRRA 132
                           *..449999*****996 PP
2Auxin_resp94.31.9e-31157237182
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                           +a++++++s+F++++nPr ++seF+v++ k++k l+ ++s+G+Rfk+   +ed++er+  G+++g+s++dp+rWp+SkW+sL
  Sobic.009G196900.3.p 157 VASSLDNRSIFHICFNPRIGASEFIVPYCKFLKGLNYPFSIGTRFKVGCKNEDANERS-FGLISGISEVDPIRWPGSKWKSL 237
                           578899***************************************************9.8********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-4327144IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-3828134IPR015300DNA-binding pseudobarrel domain
CDDcd100177.67E-2229131No hitNo description
PfamPF023627.2E-2231132IPR003340B3 DNA binding domain
SMARTSM010194.7E-2331133IPR003340B3 DNA binding domain
PROSITE profilePS5086313.04231133IPR003340B3 DNA binding domain
PfamPF065079.8E-25158237IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MFGRNIHDGE TEEKDGEKED GDGEKLTSHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL  60
DYEQLRPSQE LIAKDLHGMK WRFRHIYRGQ PRRHLLTTGW SSFINKKKLV SGDAVLFLRG  120
SDGELRLGVR RAVQLKNEAL LEAVNCTDSK LLMLSAVASS LDNRSIFHIC FNPRIGASEF  180
IVPYCKFLKG LNYPFSIGTR FKVGCKNEDA NERSFGLISG ISEVDPIRWP GSKWKSLLVK  240
WDGDTKYSHQ NRVSPWDIER VGSSVSVTHC LSSCVSKRMK LCFPQGNLDA PILDGNGRPD  300
SVGTEGFHQV LQGQELVRVH GAACSHSSDT PRCQGSYGRR FSADVWNCKM NDGHLNTTGF  360
AYQPLGFSES VKFSEVLQGQ EMSQVAAPSF MRDAFSAGTQ NGRVRSFDYV QRSAATQGYA  420
LQQFNLPATE VHSPSSVLMF NQTMVPQPEL DGLTNREEAY GSGYSSIAIQ REAEPWPSTQ  480
QQRVRENGSE PLDTTEASAP ARIAKSGSVD RGVGGSSCKL FGFSLTEKIL GTEGVGGKEG  540
NYEADRQTPR VLDLLGHGHS TPGALHALCA APLGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-7523263150392Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.210740.0panicle
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G196900.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0648530.0BT064853.1 Zea mays full-length cDNA clone ZM_BFb0215K23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302630.10.0auxin response factor 14
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A1B6P9I20.0A0A1B6P9I2_SORBI; Auxin response factor
STRINGSb09g025500.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-118ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]