PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G198100.1.p
Common NameSb09g025580, SORBIDRAFT_09g025580
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family VOZ
Protein Properties Length: 610aa    MW: 66795.6 Da    PI: 5.4133
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G198100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ414.71.7e-1272744911217
                   VOZ   1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataks 88 
                           p+ps++lgpkcalwdc rp+ g+e+  dyc+ +ha laln+ gl+gt+pv+rpkgidlkdg+lfaal akvqgk+vgip+c gaat+ks
  Sobic.009G198100.1.p 274 PSPSQYLGPKCALWDCGRPVGGTEDSGDYCNPYHAGLALNDdGLLGTRPVMRPKGIDLKDGPLFAALIAKVQGKNVGIPVCGGAATSKS 362
                           89**************************************9799********************************************* PP

                   VOZ  89 pwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeinel 177
                           pwna+elfdlsllege++rewlffd+prrafesgnrkqrslpdysgrgwhesrkqvmk+f+glkrsyymdpqpsss+ewhl+eyein +
  Sobic.009G198100.1.p 363 PWNAPELFDLSLLEGESLREWLFFDTPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKDFAGLKRSYYMDPQPSSSHEWHLFEYEINAS 451
                           ***************************************************************************************** PP

                   VOZ 178 dalalyrlelklvdekksakgkvskdsladlqkklgrlta 217
                           dalalyrle+k++d+kksak+k+s+++l+++q+++grlta
  Sobic.009G198100.1.p 452 DALALYRLEYKSSDSKKSAKSKLSSSPLNEIQQQMGRLTA 491
                           **************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MAGDPAAGGG GDAHPASGSK SSRSSTRHRQ FRDRAKVRVD DLQEMFCGLQ SARKESRSAD  60
AAVLEEQVHQ MLREWRAELS VPSPASSLQN SQGNNREASD PPSDTLRLLQ LVVPEEEDDA  120
TSKLLVPQSA QQAPPPHQSH DHGQDSRMAN TDQQCEAMDG GTAPAQHSLG QGVEAGCGEV  180
AAVANAMFND QMYYIDQELS IDDFLCDDDY KINISGSNED QFNNLHGIGQ LEHQQFDLPL  240
DLPPTHSYAD ANNSEQNAGD VFVHMSDLLT TIWPSPSQYL GPKCALWDCG RPVGGTEDSG  300
DYCNPYHAGL ALNDDGLLGT RPVMRPKGID LKDGPLFAAL IAKVQGKNVG IPVCGGAATS  360
KSPWNAPELF DLSLLEGESL REWLFFDTPR RAFESGNRKQ RSLPDYSGRG WHESRKQVMK  420
DFAGLKRSYY MDPQPSSSHE WHLFEYEINA SDALALYRLE YKSSDSKKSA KSKLSSSPLN  480
EIQQQMGRLT ADSPVENKRT ARSKPKANQN DINANIHAHV NSPSQVNAPN AYQTTPQVNQ  540
MTFLNGNVVY GPHLPHSENV VHGPHLPQSE NVVYGPHLPH SENVVYGPHL PHGYKAEGSS  600
FFWNPSDGT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G198100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396290.0BT039629.1 Zea mays full-length cDNA clone ZM_BFc0035D15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440076.10.0transcription factor VOZ1
SwissprotQ9SGQ01e-145VOZ1_ARATH; Transcription factor VOZ1
TrEMBLC5Z0Y90.0C5Z0Y9_SORBI; Uncharacterized protein
STRINGSb09g025580.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23433888
Representative plantOGRP23271335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.21e-102vascular plant one zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yasui Y,Kohchi T
    VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5
    [PMID:25351333]
  3. Kumar S,Choudhary P,Gupta M,Nath U
    VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition.
    Plant Physiol., 2018. 176(4): p. 2917-2930
    [PMID:29507119]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]