PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G206800.1.p
Common NameSb09g026350, SORBIDRAFT_09g026350
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 242aa    MW: 25326.7 Da    PI: 9.2748
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G206800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.36.7e-33154212159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK vk+s fprsYYrCt+++C vkk+v+r a+d+++v++tYeg Hnh+
  Sobic.009G206800.1.p 154 LDDGYRWRKYGQKAVKNSAFPRSYYRCTHHTCDVKKQVQRLAKDTSIVVTTYEGVHNHP 212
                           59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-33140212IPR003657WRKY domain
SuperFamilySSF1182901.44E-28146213IPR003657WRKY domain
PROSITE profilePS5081128.483149214IPR003657WRKY domain
SMARTSM007742.5E-38154213IPR003657WRKY domain
PfamPF031063.6E-26155212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MENSPLHGVI RQPNTPPLAT GTCLAPLPPA VAAPQPPEQH ACSSDATTTS LVPGAATMMS  60
CPPAAVDWAS LLLPRAPGTL HVGTTPPPVA SEVESGGSSA VTVAGSSASA TAAGEGDNNY  120
KAGKAGKAGG GGRGKKKASR PRFAFQTRSD NDVLDDGYRW RKYGQKAVKN SAFPRSYYRC  180
THHTCDVKKQ VQRLAKDTSI VVTTYEGVHN HPCEKLMEAL SPILKQLQLL SQLQSCTNQL  240
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-24144211774Probable WRKY transcription factor 4
2lex_A4e-24144211774Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G206800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9580741e-180EU958074.1 Zea mays clone 1671428 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441423.11e-179probable WRKY transcription factor 56
TrEMBLC5Z1G41e-177C5Z1G4_SORBI; Uncharacterized protein
STRINGSb09g026350.11e-178(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.12e-46WRKY DNA-binding protein 56