PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G208000.1.p
Common NameSb09g026440, SORBIDRAFT_09g026440
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 477aa    MW: 52621.3 Da    PI: 4.8253
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G208000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.41.3e-34281192102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+
  Sobic.009G208000.1.p  28 FLIKTYEMVEDPATNHVVSWGPGGASFVVWNPPDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANDDFIRGH 107
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           ++ll++i+r+k 
  Sobic.009G208000.1.p 108 THLLKNIHRRKP 119
                           *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.26E-3623117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-6224117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-3824117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-3028117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-202851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEGCNSHGGG GGGGGGGGGG GSSSPPPFLI KTYEMVEDPA TNHVVSWGPG GASFVVWNPP  60
DFSRDLLPKY FKHNNFSSFI RQLNTYGFRK IDPERWEFAN DDFIRGHTHL LKNIHRRKPV  120
HSHSLQTQVN GPLAESERRE LEDEINRLKY EKSLLLADLQ RQNQQRCGIS WQMQSLESRL  180
VAMEERQRHI VASLCDILQR HGVVPGSTTT TLEMETPADH FSKKRRVPKF GFFVDADEPK  240
VEEQQVPSFL QTVGGVVAET PGMSPIRLLN DEPFEKMELA LVSLENFFQR ATHSPAANDI  300
DMYAGGAAEP PSPALSLGEM FSVSAPMDTS INLQSSARHC QNPFASTSGQ DQSSSPLAQA  360
EPPSYDARSP ILPLAQLHEY APRAAEVDMN SDTTTGDTSQ DETTSETEGS HLPAKANDIF  420
WEQFLKDEEG KIEAKEDVKT AVDRSCRRLQ DNVDQITEQM GQLDSAENGS YAPQTY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-251611717129Heat shock factor protein 1
5d5v_B2e-251611717129Heat shock factor protein 1
5d5v_D2e-251611717129Heat shock factor protein 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Hardly expressed in young leaves at 14 days after sowing (DAS). Expression detected in adult leaves at 28 DAS and increases with growing stage. {ECO:0000269|PubMed:12032317}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G208000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3623151e-159AK362315.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2004D11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440121.10.0heat stress transcription factor A-4d
SwissprotQ93VB51e-152HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLC5Z1H30.0C5Z1H3_SORBI; Uncharacterized protein
STRINGSb09g026440.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Representative plantOGRP1286345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-70heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]