PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G235500.1.p
Common NameSb09g028790, SORBIDRAFT_09g028790
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 88aa    MW: 9934.05 Da    PI: 7.5034
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G235500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-081359245
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                           +W++ E + + +a + +G g   +W+++++ mg  +++++++ ++ 
  Sobic.009G235500.1.p 13 SKWSPKENKMFEQALAYYGEGtpnRWDKVSSAMGGIKSAEEVRCHYE 59
                          58********************************668******9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.423762IPR017877Myb-like domain
SMARTSM007178.9E-41164IPR001005SANT/Myb domain
SuperFamilySSF466896.13E-111261IPR009057Homeodomain-like
PfamPF002495.1E-71460IPR001005SANT/Myb domain
CDDcd001672.35E-51458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSASRSSSPN SMSKWSPKEN KMFEQALAYY GEGTPNRWDK VSSAMGGIKS AEEVRCHYED  60
LDYDVKMIES GHVPYPQYKT QGFWTRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-20682277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G235500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9551811e-119EU955181.1 Zea mays clone 1515957 SANT/MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303052.12e-60protein RADIALIS-like 3
SwissprotF4JVB84e-23RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1B6P9W34e-59A0A1B6P9W3_SORBI; Uncharacterized protein
STRINGSb09g028790.16e-60(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-23RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]