PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G236000.1.p
Common NameSb09g028850, SORBIDRAFT_09g028850
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 230aa    MW: 24106.2 Da    PI: 7.4972
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G236000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-19107141135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C+nC t +TplWR+gp+g+k+LCnaCG++y+k+++
  Sobic.009G236000.1.p 107 CANCDTASTPLWRNGPRGPKSLCNACGIRYKKEER 141
                           ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.38E-1498142No hitNo description
SMARTSM004012.6E-18101153IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.903101137IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.1E-17102141IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.59E-13106138No hitNo description
PROSITE patternPS003440107132IPR000679Zinc finger, GATA-type
PfamPF003202.4E-17107141IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MLQQEVPPCA CGPRYAGGCG GRCAASAPAF SLLFPMPMAL PPEQCYYYHA EDGGPVDCTL  60
SLATPSTRRA EAAGVVHARA GGGGGGAAVL VEEPLQQQQE GSPPRRCANC DTASTPLWRN  120
GPRGPKSLCN ACGIRYKKEE RRAAAAVAPA PATQDSGGWL YACGGYARPP QQQQQQQWGC  180
YGKSVASYGM YGGDGVVDAD GPCLSWMLNV VPSSPAFAVP ERHTLFQYY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G236000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441533.11e-165GATA transcription factor 15
SwissprotQ9ZPX02e-26GAT20_ARATH; GATA transcription factor 20
TrEMBLC5YVX71e-164C5YVX7_SORBI; Uncharacterized protein
STRINGSb09g028850.11e-165(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.11e-24GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]