PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G239000.1.p
Common NameSb09g029120, SORBIDRAFT_09g029120
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 246aa    MW: 25448.7 Da    PI: 8.2717
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G239000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF694.5e-221865249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          rie++  rqv fskRr+g++KKA+ELS+LC+a+va ++fs+ gk + +
  Sobic.009G239000.1.p 18 RIESDEARQVCFSKRRAGLFKKASELSILCGADVAAVVFSPAGKAFSF 65
                          8******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.98E-29981IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.717969IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-35968IPR002100Transcription factor, MADS-box
CDDcd002654.47E-411084No hitNo description
PRINTSPR004043.6E-201131IPR002100Transcription factor, MADS-box
PfamPF003193.5E-261865IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-203146IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-204667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAPPRRPSMG RQKIEIRRIE SDEARQVCFS KRRAGLFKKA SELSILCGAD VAAVVFSPAG  60
KAFSFGHPSV ESVVERFLAS SSPSPAGAGA GHSSAGGGED RAVSELNRQH GELRAQLDAE  120
KTRQERADEA IRKEREARSP AMAWIDADLS AMGHDDLVAF WTALAGVQAA VAASADQLLR  180
DALLVGRRGR HQQPAQLAGG GVAFDVGAFG IGMQVQPPPG FAGVDLQGFG LGGQAAAILG  240
AAGPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-17990182MEF2 CHIMERA
6byy_B2e-17990182MEF2 CHIMERA
6byy_C2e-17990182MEF2 CHIMERA
6byy_D2e-17990182MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G239000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9692080.0EU969208.1 Zea mays clone 326824 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441547.11e-172agamous-like MADS-box protein AGL29
TrEMBLC5YW051e-171C5YW05_SORBI; Uncharacterized protein
STRINGSb09g029120.11e-172(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-30AGAMOUS-like 61