PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G244200.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ZF-HD
Protein Properties Length: 374aa    MW: 39706.2 Da    PI: 8.6059
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G244200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer86.72.4e-27133184358
           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                           ++rY+eCl+NhAa+lGgh+vDGCgEfmp     g+ + lkCaACgCHR+FHR++ +
  Sobic.009G244200.2.p 133 EARYHECLRNHAAALGGHVVDGCGEFMPG----GDGDRLKCAACGCHRSFHRKDDA 184
                           689*************************8....6779****************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.1E-24134182IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-23135182IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-16135182IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.046136182IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.9E-30270336IPR009057Homeodomain-like
SuperFamilySSF466898.51E-18272336IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-26278334IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGTGRGSPIP APGCPLSVAA LHHRHRGPPE TKAPFPSPGT GKQPGTTTAP VPSSPSPQAV  60
TVTASGSPCV LRHRRAGAAA PAFLGQEEEE QEQEEEEPVS EEMGASSAPP PALAPAPASA  120
SASASGHQNH AAEARYHECL RNHAAALGGH VVDGCGEFMP GGDGDRLKCA ACGCHRSFHR  180
KDDARRRHQL LLPAPAPPVL SPTTPAPRVP LLLPPPHPHY AAGAAVAHPH YVPPPFPYHG  240
TPSGSGGGTT TESSSEERGP PSGPSAAAAA HAQGHVRRKR FRTKFTPEQK EQMLAFAERL  300
GWRMQKQDDA LVQHFCDQVG VRRQVFKVWM HNNKHTGSGG RRQLPQPQEQ QQPQQQPPQT  360
QTQAHQQQPQ QEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-262793371876ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G244200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849210.0KF184921.1 Saccharum hybrid cultivar R570 clone BAC 078K12 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304142.10.0zinc-finger homeodomain protein 6
SwissprotB8AX533e-80ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A1Z5R3W70.0A0A1Z5R3W7_SORBI; Uncharacterized protein
STRINGSb09g029550.11e-154(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-26homeobox protein 22