PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G244300.2.p
Common NameSb09g029560, SORBIDRAFT_09g029560
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 89aa    MW: 9723.87 Da    PI: 7.5075
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G244300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.5e-091459244
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                            WT+   +l+ +a + + ++   +W+ Iar +g g+++++++ ++
  Sobic.009G244300.2.p 14 AQWTPKQNKLFEQALAVYDKDtpdRWHNIARAVGGGKSAEDVRRYY 59
                          57*****************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.133863IPR017877Myb-like domain
SMARTSM007172.6E-71265IPR001005SANT/Myb domain
PfamPF002496.7E-71459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-41564IPR009057Homeodomain-like
SuperFamilySSF466891.05E-111570IPR009057Homeodomain-like
CDDcd001673.71E-71659No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASMQSMTSA AARAQWTPKQ NKLFEQALAV YDKDTPDRWH NIARAVGGGK SAEDVRRYYD  60
LLEEDVGHIE SGKVPFPAYR CATGYGAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-2716841178RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.112131e-150shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G244300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849211e-114KF184921.1 Saccharum hybrid cultivar R570 clone BAC 078K12 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441574.14e-61protein RADIALIS-like 3
SwissprotQ1A1736e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLC5YWE68e-60C5YWE6_SORBI; Uncharacterized protein
STRINGSb09g029560.11e-60(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-30RAD-like 6