PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G245500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 617aa    MW: 68481.8 Da    PI: 4.6963
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G245500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.91.8e-27191532128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknratk....sgyWk 84 
                           ppG+rF Pt+eelv+ yL++k+eg++l+l +v+++v i++++P +L +++k+ +e++w+fF+ r++++++ +k+++r+++    +++Wk
  Sobic.009G245500.1.p  19 PPGYRFVPTEEELVDVYLRAKIEGHELPL-NVVNDVSILDWQPGRLVEEYKGyGENRWFFFTVREQSSSNkEKEPSRKVRvegvTATWK 106
                           9****************************.99**************8554443788*******999988624555665444344778** PP

                   NAM  85 atgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           atg+ + + ++     ++ +vg+k++L++ + ++   e+ +W mhey l
  Sobic.009G245500.1.p 107 ATGSVQLIRRTtskdgDKVVVGTKRVLIYNSSDTD--ENGKWSMHEYIL 153
                           ****9999998666666666*********955444..599*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-299170IPR003441NAC domain
PROSITE profilePS5100532.03818170IPR003441NAC domain
PfamPF023657.2E-1819152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MEVAATTPSH ELVPQLQFPP GYRFVPTEEE LVDVYLRAKI EGHELPLNVV NDVSILDWQP  60
GRLVEEYKGY GENRWFFFTV REQSSSNKEK EPSRKVRVEG VTATWKATGS VQLIRRTTSK  120
DGDKVVVGTK RVLIYNSSDT DENGKWSMHE YILKDHAEIG QYALYSIQRK QHSDTEGNAD  180
MDPKKKKKKT KRRKWTETET ETPSTELEGV QLPHPETSTT TLLAEPPLKP TRKAKGQRKK  240
KPSMQVGVEG EQQQQGQSPM EPVTPPKKDE LVPSSQQELR QEQAAADGAP APVVLSAVPL  300
QAVRVCPPSE PDGTLGASAP KLEEGTLDEM SQLLALLYNH HPSMPCNNQG EEQWPPSFTD  360
DSAPFLAAPD TNVVVDHAPF LSYQQKLDSY SLFAEHNQHL SLGENDQSVH MQQGWQHADL  420
MFLMDDNTTQ QMNSSVSWDS KQHGDDQRHQ VHQQQPEQQE EESNGGAFGV VQDQQPMNHL  480
QGGHGRLPPS DEPQLPGSDD LQVDSLLFGE SVQTGELDAF LRGVLVHGDE PTQGGLAAGT  540
QEQLQGGDDP ATTLQAAGTE EQGPDDAATL YQHDDLERQL AWLRALNEHV LDHVRDGPCS  600
CMICAAGLWH YHFPGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-1511737171NAC domain-containing protein 19
3swm_B1e-1511737171NAC domain-containing protein 19
3swm_C1e-1511737171NAC domain-containing protein 19
3swm_D1e-1511737171NAC domain-containing protein 19
3swp_A1e-1511737171NAC domain-containing protein 19
3swp_B1e-1511737171NAC domain-containing protein 19
3swp_C1e-1511737171NAC domain-containing protein 19
3swp_D1e-1511737171NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183191KKKKKKTKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G245500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303969.10.0uncharacterized protein LOC110430538
TrEMBLA0A1B6PA730.0A0A1B6PA73_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Representative plantOGRP1208335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-20NAC family protein