PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G253300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 285aa    MW: 29508 Da    PI: 8.8215
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G253300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.18.3e-13138182347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +W++eE+ l++ + ++lG g+W+ I+r + ++Rt+ q+ s+ qk+
  Sobic.009G253300.1.p 138 PWSEEEHRLFLVGLEKLGRGDWRGISRGFVTTRTPTQVASHAQKF 182
                           8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.383131187IPR017930Myb domain
SuperFamilySSF466891.56E-16133187IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-16134186IPR006447Myb domain, plants
SMARTSM007179.0E-10135185IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-9135178IPR009057Homeodomain-like
PfamPF002494.7E-10138181IPR001005SANT/Myb domain
CDDcd001674.42E-9138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MQTMHAVASR CSNCGSYGHG SIACRIATAD HQRGSEAATM RCGRGGAAAA AGLRLFGVQL  60
HAASTCSGGA AAPTTPTAPS LQLHRSYSVD CGCLSLQGGW PLPVALSPSS GCDGCYLSDD  120
GGRGSAALRE RERKKGVPWS EEEHRLFLVG LEKLGRGDWR GISRGFVTTR TPTQVASHAQ  180
KFFLRQNGAG AGAGATKKSS KRRSSLFDMV QECESGSRHV VLVVSNTSGC KAAGSSNSLS  240
PKASVSEMDE EQQAHGRYHC SPLNLELGMS LSSSSSSTTP SIGT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.89640.0root| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G253300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1846735e-91KF184673.1 Saccharum hybrid cultivar R570 clone BAC 008G08 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303429.10.0transcription factor MYBS3-like
TrEMBLA0A1B6PA600.0A0A1B6PA60_SORBI; Uncharacterized protein
STRINGSb09g030390.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-35MYB_related family protein