PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G006000.2.p
Common NameSb10g000780, SORBIDRAFT_10g000780
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 239aa    MW: 26678.1 Da    PI: 9.807
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G006000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.82.8e-2533135196
                           EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                           f+kv t+sdv+k++rlv+pk+fae+h          +++ l + d ++       W+++++y+ +s++yv+tkGW+++v++++L +gD+
  Sobic.010G006000.2.p  33 FEKVVTQSDVGKLNRLVVPKQFAERHlplrgAAARSRGTVLCFHDARSggtspAAWRFRYSYWSSSQSYVMTKGWNRYVRDKRLVAGDT 121
                           99***************************984445578899999955559*************************************** PP

                           EEEEE-SSSEE..EEEE CS
                    B3  80 vvFkldgrsefelvvkv 96 
                           v+F +   ++++l++  
  Sobic.010G006000.2.p 122 VTFCR---DGARLFIDC 135
                           ***94...445566655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-3423143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-2729142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-1931129No hitNo description
PfamPF023624.2E-2233136IPR003340B3 DNA binding domain
PROSITE profilePS5086312.18233139IPR003340B3 DNA binding domain
SMARTSM010191.1E-1533143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MALTLAPELE STAAGSNYSH SSDSGSGRRE HMFEKVVTQS DVGKLNRLVV PKQFAERHLP  60
LRGAAARSRG TVLCFHDARS GGTSPAAWRF RYSYWSSSQS YVMTKGWNRY VRDKRLVAGD  120
TVTFCRDGAR LFIDCRHRQR RSSRRTGEQG AAVPHAVVVP AAMLAALPPV TLRHQQPQGL  180
VVFSGQHQQQ ADQDAVVVED EEEEEEAQRQ RGRWLRLFGV NLLELRTEAP VLLDLQLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-38291404115B3 domain-containing transcription factor NGA1
5os9_B4e-38291404115B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G006000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437686.11e-176B3 domain-containing protein Os06g0107800
SwissprotQ5VS558e-49Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A194YHN41e-174A0A194YHN4_SORBI; Uncharacterized protein
STRINGSb10g000780.11e-175(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Representative plantOGRP1558924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.13e-39B3 family protein