PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G006100.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 206aa    MW: 22961.1 Da    PI: 10.6628
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G006100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B385.74e-272104199
                           EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+kv tpsdv+k++rlv+pk+fae+h          +++ l + d +g    W+++++y+ +s++yv+tkGW+++v++++L +gD+v+F
  Sobic.010G006100.2.p   2 FEKVVTPSDVGKLNRLVVPKQFAERHlplrgAAARSRGTVLCFHDARGggTAWRFRYSYWSSSQSYVMTKGWNRYVRDKRLAAGDTVTF 90 
                           99***************************98444558889*****88888*************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                               r++++l++  +r+
  Sobic.010G006100.2.p  91 C---RDGARLFIDCRRR 104
                           *...4667788888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-341107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-281103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-19195No hitNo description
SMARTSM010191.3E-182105IPR003340B3 DNA binding domain
PfamPF023623.0E-242104IPR003340B3 DNA binding domain
PROSITE profilePS5086313.5632105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MFEKVVTPSD VGKLNRLVVP KQFAERHLPL RGAAARSRGT VLCFHDARGG GTAWRFRYSY  60
WSSSQSYVMT KGWNRYVRDK RLAAGDTVTF CRDGARLFID CRRRQRSSRT GEQAAAVPHA  120
VVVPAAILAV SPTTAGHQQQ KQGLVIFSGQ HQRQQVEEAV AVVEAAAEAE EDDEEAGRRR  180
GRWLRLFGVN LLQFRADPVL LDLQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-3911067115B3 domain-containing transcription factor NGA1
5os9_B1e-3911067115B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G006100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269651e-117KJ726965.1 Zea mays clone pUT3665 ABI3VP1 transcription factor (ABI37) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304886.11e-149B3 domain-containing protein Os06g0107800-like
SwissprotQ5VS552e-50Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A194YGL81e-148A0A194YGL8_SORBI; Uncharacterized protein
STRINGSb10g000780.12e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Representative plantOGRP1558924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.16e-41B3 family protein