PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G008300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 207aa    MW: 22483.5 Da    PI: 4.6956
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G008300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-1460138185
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f +v+ +s v +  +lv+p +f ++   +++ +    +   +grsW+v +  ++ +++  l++ W++F+++ngL+ gD +vF+l+
  Sobic.010G008300.1.p  60 FTSVMCKSQVQNPFQLVIPVRFHRHLP-ETRAP---AVLMCRGRSWTVSY--CGVGKWKRLQGAWRDFARDNGLRLGDACVFELV 138
                           788999****************95553.22333...344469********..99999999***********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-2253138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-1855138IPR015300DNA-binding pseudobarrel domain
CDDcd100172.17E-1658138No hitNo description
PfamPF023629.7E-1360138IPR003340B3 DNA binding domain
SMARTSM010192.3E-660146IPR003340B3 DNA binding domain
PROSITE profilePS5086312.02660156IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MPVQELSSLK QEPLPSFLCL LSINPKVEPC EDEEPPLPPP FQASSDEWEV TPLSGDNPFF  60
TSVMCKSQVQ NPFQLVIPVR FHRHLPETRA PAVLMCRGRS WTVSYCGVGK WKRLQGAWRD  120
FARDNGLRLG DACVFELVVP TAAGAGTEAA AAAASERDGN DSSGSSKEKE GKTMEVVFRV  180
QVLRSGLPEE IASRGATSDD PLVILD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G008300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687661e-122EU968766.1 Zea mays clone 324000 B3 DNA binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306161.11e-150B3 domain-containing protein Os06g0112300 isoform X1
TrEMBLA0A194YGP21e-148A0A194YGP2_SORBI; Uncharacterized protein
STRINGSb10g000950.11e-135(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120461933
Representative plantOGRP7665916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-06B3 family protein