PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G008300.2.p
Common NameSb10g000950, SORBIDRAFT_10g000950
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 194aa    MW: 20945.7 Da    PI: 4.674
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G008300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.8e-1547125185
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f +v+ +s v +  +lv+p +f ++   +++ +    +   +grsW+v +  ++ +++  l++ W++F+++ngL+ gD +vF+l+
  Sobic.010G008300.2.p  47 FTSVMCKSQVQNPFQLVIPVRFHRHLP-ETRAP---AVLMCRGRSWTVSY--CGVGKWKRLQGAWRDFARDNGLRLGDACVFELV 125
                           788999****************95553.22333...344469********..99999999***********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-2240125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-1942125IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-1645125No hitNo description
PfamPF023628.0E-1347125IPR003340B3 DNA binding domain
PROSITE profilePS5086312.02647143IPR003340B3 DNA binding domain
SMARTSM010192.3E-647133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEIPGCVSSI NPKVEPCEDE EPPLPPPFQA SSDEWEVTPL SGDNPFFTSV MCKSQVQNPF  60
QLVIPVRFHR HLPETRAPAV LMCRGRSWTV SYCGVGKWKR LQGAWRDFAR DNGLRLGDAC  120
VFELVVPTAA GAGTEAAAAA ASERDGNDSS GSSKEKEGKT MEVVFRVQVL RSGLPEEIAS  180
RGATSDDPLV ILD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G008300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687661e-122EU968766.1 Zea mays clone 324000 B3 DNA binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437693.11e-140B3 domain-containing protein Os06g0112300 isoform X2
TrEMBLC5Z2Q11e-139C5Z2Q1_SORBI; Uncharacterized protein
STRINGSb10g000950.11e-140(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.19e-07B3 family protein