PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G016500.1.p
Common NameCBF5, Sb10g001620, SORBIDRAFT_10g001620
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 250aa    MW: 26230.5 Da    PI: 4.5407
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G016500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-1856107155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           + y+GVr++   grWv+e+r+p   +k+ r++lg+f tae Aa+a++ a+++l+g
  Sobic.010G016500.1.p  56 PVYRGVRRRGPAGRWVCEVREP---NKKSRIWLGTFATAEAAARAHDVAALALRG 107
                           68****************9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1356107IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2057117IPR016177DNA-binding domain
PROSITE profilePS5103222.31357115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3057117IPR001471AP2/ERF domain
SMARTSM003801.7E-2557121IPR001471AP2/ERF domain
PRINTSPR003671.4E-55869IPR001471AP2/ERF domain
PRINTSPR003671.4E-58197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEYGVADDYG YGYGGYDDQQ DLPSSSSVDG DEYATVLSAP PKRPAGRTKF RETRHPVYRG  60
VRRRGPAGRW VCEVREPNKK SRIWLGTFAT AEAAARAHDV AALALRGRAA CLNFADSARL  120
LRVDPATLAT PDDIRRAAIQ LAEDSSSSTP DASAAAAAVA VASSASVGQA TPSSSAYQAG  180
DDATGAAMYG AEYAAAAMYG AGMDFDHSYY YDGMVGGNEW QSAGSSGWHS NVDAGDDEGA  240
GDMSLWSYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-14551141271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.133970.0embryo| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G016500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7858980.0AY785898.1 Sorghum bicolor SbCBF5 (CBF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436386.11e-178dehydration-responsive element-binding protein 1C
TrEMBLQ3T5N11e-177Q3T5N1_SORBI; SbCBF5
STRINGSb10g001620.11e-178(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP1274245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.18e-34dehydration response element B1A
Publications ? help Back to Top
  1. Skinner JS, et al.
    Structural, functional, and phylogenetic characterization of a large CBF gene family in barley.
    Plant Mol. Biol., 2005. 59(4): p. 533-51
    [PMID:16244905]