PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G025850.4.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 723aa    MW: 80675.4 Da    PI: 4.8378
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G025850.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-08572614145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           rg+W++ + +l++++++q+G++ ++ I + ++  +t+ q++ ++ 
  Sobic.010G025850.4.p 572 RGKWSKSDTDLFYEGIRQFGSD-FAMIQQLLP-DKTRHQVRQKFK 614
                           89********************.*********.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF102481.1E-2079260IPR019376Myeloid leukemia factor
PfamPF159631.9E-23565645No hitNo description
SuperFamilySSF466894.11E-10566620IPR009057Homeodomain-like
PROSITE profilePS5129310.725570621IPR017884SANT domain
SMARTSM007178.7E-9571619IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-5571618IPR009057Homeodomain-like
CDDcd001675.18E-6574614No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MDRGQNRRDD VFRGRDPFAG FGSHRSLISG FFGGRDRFDD PFFTRPFGGQ MMGEHGMFGP  60
GPFGGQMMGE HDMFGPSPFG PMGGPFGDMG NHGFIEQAPP RGNSRRPVIT EVDEDEGENA  120
EHGNKQPNQD SYVQEPDDGS DGTEGGQVQL RRDLNSANSG GQPQARTFTY QSSSVTYGGI  180
NGAYYTASTT RRTGSDGITV EESKEADTTT KEATHRISRG IHDKGHSLTR KLNSDGKVDT  240
TQTMHNLNED ELAGFEESWK GNAGHYLPGW NQNAGAPNSD NSGREKGKSK SVSFYLSDAS  300
GVATPTDTNS EMGNIGNSCS DKLTDENLSN SSQQMTEKHS VTEDQYSNDQ DHEGEPLDHT  360
VEQQPNSDVG EIASSMKLRC RKKLQKVGTP NHTVDDCFDE DCVEPSLAEE DNDSGDDYTT  420
GNKRKARKKS RDGVEESQQQ KVQKNKSKVS SRGRKRTLKD ELAAKPEKKK LTHRIRQRTP  480
KEIKTLLESE EIDPMKLSAA HLRLLQEARE RVNPKEIPSG PSSNSRSFGL EDMDDLDYRD  540
EEARFFDNDG TENHVQNTTK LNYQSYMNKP ARGKWSKSDT DLFYEGIRQF GSDFAMIQQL  600
LPDKTRHQVR QKFKSEEKKN PLLVHDAIFH RSGDNLYFKK VIKQLNIEDV VLPEINNAQK  660
QDGTSSERGP GNENVLDDFN EEENSSNWSN EEHGGQMDDV QEEHDLGNGG DDDDLGDVFD  720
WY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.98170.0embryo| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G025850.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0877290.0BT087729.1 Zea mays full-length cDNA clone ZM_BFb0176L23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305379.10.0uncharacterized protein LOC8069083 isoform X4
TrEMBLA0A1W0VR550.0A0A1W0VR55_SORBI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-31MYB_related family protein