PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G029200.1.p
Common NameSb10g002680, SORBIDRAFT_10g002680
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 230aa    MW: 24645.1 Da    PI: 10.3369
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G029200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.78.2e-202465243
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                           ie+k +rqvtfskR+ g+lKKA+EL  LC+a va++ifs++
  Sobic.010G029200.1.p 24 YIEDKEKRQVTFSKRKGGLLKKASELHLLCGAHVAIVIFSQQ 65
                          69**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-201573IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.7961564IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-201667IPR002100Transcription factor, MADS-box
CDDcd001209.61E-241664No hitNo description
PRINTSPR004043.2E-141737IPR002100Transcription factor, MADS-box
PfamPF003194.2E-212565IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-143752IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-145273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVKPVVGKKP TAKSKGKQRI KIEYIEDKEK RQVTFSKRKG GLLKKASELH LLCGAHVAIV  60
IFSQQKQQDA NDPNLAAAAA ALAAAAAAGL PPGGRRSSAR RRGGGNVFAM GTPSVDHVMS  120
ARLAGAGDPY GHRAALEEEE DDARAAVAGR EGAEATARRR DEARELVDAE EERMKAVADK  180
VRLATAVGRF WWEADVEALG EAELPEFGGA LKRLRDNVLR RHADKLVPQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G029200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437792.11e-162agamous-like MADS-box protein AGL62
TrEMBLC5Z3R71e-161C5Z3R7_SORBI; Uncharacterized protein
STRINGSb10g002680.11e-162(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-14AGAMOUS-like 62