PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G029450.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YB
Protein Properties Length: 93aa    MW: 10515.1 Da    PI: 9.1232
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G029450.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB29.22.1e-092092780
                 NF-YB  7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyv 80
                          ++P   ++ im++v P +++++ ++ket+++ + +f   +t    +  ++++r ti+gd+++  +a+ G+ +yv
  Sobic.010G029450.1.p 20 IIPRGTIALIMRQVQPHDSRVTSNTKETMDQRM-QFSVTLTRAVMQEFRQDRRLTITGDNMIIGFASSGLVNYV 92
                          6788999**********************8865.6777889999999***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.6E-61792IPR009072Histone-fold
SuperFamilySSF471137.96E-61992IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MIITMHDDLQ GSKPPQESYI IPRGTIALIM RQVQPHDSRV TSNTKETMDQ RMQFSVTLTR  60
AVMQEFRQDR RLTITGDNMI IGFASSGLVN YV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G029450.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652166.12e-29nuclear transcription factor Y subunit B-4
TrEMBLA0A1W0VRB44e-61A0A1W0VRB4_SORBI; Uncharacterized protein
STRINGGRMZM2G152822_P017e-29(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47640.11e-07nuclear factor Y, subunit B2