PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G029500.1.p
Common NameSb10g002710, SORBIDRAFT_10g002710
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YB
Protein Properties Length: 197aa    MW: 21156.7 Da    PI: 4.0954
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G029500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB95.26e-3022111695
                 NF-YB   6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                             +P a ++rim++vlP++++++ +aketv++c++ef + +t+ a + c+r++r+ti++ddl+  +a lGf dyv+p++ +l+ yre  
  Sobic.010G029500.1.p  22 YTIPKATITRIMRQVLPQDSRVTSAAKETVDQCIVEFSTVLTQAAMQECRRDHRRTITADDLIAGIARLGFADYVQPMSEFLRLYRENI 110
                           5799**********************************************************************************976 PP

                 NF-YB  95 g 95 
                           +
  Sobic.010G029500.1.p 111 N 111
                           5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.1E-2616115IPR009072Histone-fold
SuperFamilySSF471131.71E-2320116IPR009072Histone-fold
PfamPF008085.0E-162484IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSNAQGNDHH DDPEGSKPLE EYTIPKATIT RIMRQVLPQD SRVTSAAKET VDQCIVEFST  60
VLTQAAMQEC RRDHRRTITA DDLIAGIARL GFADYVQPMS EFLRLYRENI NQQAVAPPAP  120
PAPPAPGMEE ETAAPLPPPS PDLTLQIGLP SVPDVTELAP RTDVYALWPG GAPAAVGTSL  180
EPTMPPPPAA DDDEDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A3e-21241081397NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G029500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437794.11e-140nuclear transcription factor Y subunit B-3
TrEMBLC5Z3S01e-139C5Z3S0_SORBI; Uncharacterized protein
STRINGSb10g002710.11e-139(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140561326
Representative plantOGRP1999422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-25nuclear factor Y, subunit B3