PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G029600.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NF-YB

Protein Properties

Length: 146aa MW: 16287.8 Da PI: 5.8427

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G029600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	45.4	2e-14	10	72	30	92
NF-YB 30 daketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 d+k+t+++c+ +f + +t a + c+++ r ti+gd+l+ +a+lG+ dyv+ ++ yl+ y + Sobic.010G029600.1.p 10 DTKDTMEQCIMQFFAALTRAAMQECRQDWRLTITGDNLVVGFASLGLVDYVQLMTEYLRLYHN 72 89*********************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-8	10	73	IPR009072	Histone-fold
SuperFamily	SSF47113	1.84E-8	10	71	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MIITMMTFMD TKDTMEQCIM QFFAALTRAA MQECRQDWRL TITGDNLVVG FASLGLVDYV 60 QLMTEYLRLY HNDPEGSKPL EEYTISNTIT RMMGQVLPQD SMSQGSPVVP RRLWTSALCN 120 SLWSSQGRPC KSASKTSASL SPPTT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G029600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1W0VR86	1e-104	A0A1W0VR86_SORBI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.7	2e-09	nuclear factor Y, subunit B1

Link Out ? help Back to Top
Phytozome	Sobic.010G029600.1.p