PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G029800.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YB
Protein Properties Length: 125aa    MW: 13859.8 Da    PI: 5.1004
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G029800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB409.1e-132781592
                 NF-YB 15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92
                          rim +v P ++ ++ d+ket+ +c+ +f   +t  a +  +r++  ti+  +l+   ++lG+ dyv+ ++ yl+ y +
  Sobic.010G029800.2.p  2 RIMSQVQPDDSSVTSDTKETM-DCIMQFSVTLTLAAMQEGRRDRHLTITDANLIVGSSSLGLVDYVQLMTEYLRLYHD 78
                          9******************98.8***************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.1E-6182IPR009072Histone-fold
SuperFamilySSF471135.69E-5278IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MRIMSQVQPD DSSVTSDTKE TMDCIMQFSV TLTLAAMQEG RRDRHLTITD ANLIVGSSSL  60
GLVDYVQLMT EYLRLYHDDP KGSKPLEEYT IPKGTITRIL CQVLPQDPSS QGSPTVPRRP  120
WTSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G029800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652166.15e-23nuclear transcription factor Y subunit B-4
TrEMBLA0A1W0VR958e-86A0A1W0VR95_SORBI; Uncharacterized protein
STRINGGRMZM2G152822_P012e-22(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.22e-09nuclear factor Y, subunit B6