PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G037701.1.p

Common Name

Sb10g003350, SORBIDRAFT_10g003350

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

LBD

Protein Properties

Length: 147aa MW: 16220.7 Da PI: 8.5069

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G037701.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	60.5	4.6e-19	1	64	36	99
DUF260 36 lFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +FG++n++++l+++p+ +r+ ++++vye++ ra dPv+G++gvi++l++ql+ +++el++l++ Sobic.010G037701.1.p 1 MFGVKNLQRMLQKVPPPRRDVCVQTIVYESNLRAADPVRGCCGVIQDLENQLMDTAVELEVLRR 64 7**********************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.253	1	66	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-17	1	63	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MFGVKNLQRM LQKVPPPRRD VCVQTIVYES NLRAADPVRG CCGVIQDLEN QLMDTAVELE 60 VLRRRLESYR RMARGSHSQS QPPNPLAIQQ QLMARTSHDT QTQGPSGVGV PPAANELTAT 120 LPQLPAMEME PQLSQVPQPR LSTMPP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G037701.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002436474.1	1e-101	LOB domain-containing protein 22
TrEMBL	A0A1W0VRC0	1e-101	A0A1W0VRC0_SORBI; Uncharacterized protein
STRING	Sb10g003350.1	1e-101	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19681	7	8
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-17	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Sobic.010G037701.1.p
Entrez Gene	8071309