PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G064700.2.p
Common NameSb10g005580, SORBIDRAFT_10g005580
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARR-B
Protein Properties Length: 673aa    MW: 72886.4 Da    PI: 6.4203
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G064700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.12e-28224277155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Sobic.010G064700.2.p 224 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 277
                           79*******************.********************************8 PP
2Response_reg76.97.4e-26351431109
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           vl vdD+p+ +++l+++l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge + + 
  Sobic.010G064700.2.p  35 VLAVDDDPVCLKVLETLLRRCQY-HVTTTNQAITALKMLRENRdtYDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKSVM 121
                           799********************.***************999999*******************87754.558**************** PP

                           HHHHTTESEEEESS--HHHHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                           + +  Ga d+l Kp+ +eel++
  Sobic.010G064700.2.p 122 KGITHGACDYLLKPVRIEELRN 143
                           ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.1E-19611672IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.2E-4132165No hitNo description
SuperFamilySSF521726.26E-3532159IPR011006CheY-like superfamily
SMARTSM004482.2E-3033145IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.70934149IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.4E-2335144IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.48E-2536148No hitNo description
PROSITE profilePS5129411.351221280IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-30222282IPR009057Homeodomain-like
SuperFamilySSF466891.4E-19222281IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-25224277IPR006447Myb domain, plants
PfamPF002491.2E-6226276IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MLLGAAAAAA AARMEEKGAI TGRRERDQFP VGMRVLAVDD DPVCLKVLET LLRRCQYHVT  60
TTNQAITALK MLRENRDTYD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSVNGETKSV  120
MKGITHGACD YLLKPVRIEE LRNIWQHVVR RKFSKRERSN LDIYKDFNKL PSADPCHGHN  180
QITAGASDQS GRISKKRKEM HSDEEDDGEE NDFQEGDEPS AAKKPRVVWS VELHRKFVAA  240
VNQLGIDKAV PKRILELMNV EKLTRENVAS HLQKYRLYLK RLSAVASQQA SIVAAFGGRD  300
PAFLHMGAFE GLQSYQPFAP CAALSSFSPH GLLGRTSAAT FGVPELAPAM TVQTATNNGI  360
ISHCAGDAND FQLSGLQENQ QANLGQGSAT SLGLPQLQQK WIQQETNDLS AVFSGSALAN  420
TLSGALQRVT SSPLPPQELL ESAQSKVSAQ PPITRPSVTV SSELVERTVG VSANLQDSSI  480
SQQGALPIND GFTADKLQLH DPFDSIGGTK FSVTMPVCSS GSLTASSNTK GGASSCSTVL  540
LAPDTGRHPN YLQFGVAGNS RHDMNEIKQD HLHQGLSTGG FNHNFGACMT EQPNPNVSYL  600
MPQVKPNTMA SEDKLKQRNA YDLGIPKLNG GFSSSSCNFD GLLNSMIKAE KDDLSFTDND  660
LGCDFFPLGA CI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-25220283164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.71220.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G064700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0334950.0BT033495.1 Zea mays full-length cDNA clone ZM_BFb0295K12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436607.20.0two-component response regulator ORR22
SwissprotB8B3I40.0ORR22_ORYSI; Two-component response regulator ORR22
TrEMBLA0A194YHP20.0A0A194YHP2_SORBI; Two-component response regulator
STRINGSb10g005580.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-112response regulator 12