PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G071600.1.p
Common NameSb10g006250, SORBIDRAFT_10g006250
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 493aa    MW: 52739 Da    PI: 5.0433
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G071600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH375.9e-12334379555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h+++Er RR++i +++  L++l+P++      K +Ka++L + ++Y+k Lq
  Sobic.010G071600.1.p 334 HSIAERLRREKISDRMKSLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 379
                           99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.77E-13327383No hitNo description
SuperFamilySSF474594.45E-17327389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.307329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-17331388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-9334379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-14335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDFSAGSYFS SWPVNSGSES YSLADGSVES YGGEGSMAPS SYFMTARSDH NLKFSVHEQD  60
STMLPNEQLT YAGAGQTDLL PGDTLSRDKL CENLLELQRL QNNSNLQSNL VAPGVLQHNS  120
TPGVFHPQLN TPGLSELPHA LSSSIDSNGS EVSAFLADVN AVSSAPTLCS AFQNASSFME  180
PVNLEAFSFQ GAQSDSVLNK TSHSNGNISV FDSATLASLH DSKEFITGRL PSFASVKEAN  240
LASSGFKTQK QVINEQNAMC NVPLPAFTAR NQMSVAATQG ALIPQKIPSW INENKSEGPV  300
SHPSDVQTQP NSAGNGVGVK PRVRARRGQA TDPHSIAERL RREKISDRMK SLQDLVPNSN  360
KADKASMLDE IIDYVKFLQL QVKVLSMSRL GAPGAVLPLL TESQTEGYHG QPLSAPTNTQ  420
GLLDALDSED AFVFEEEVVK LMETSITSAM QYLQNKGLCL MPVALASAIS TQKGVSAAAI  480
PPERRNKDML LP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.58840.0callus| leaf| ovary| pollen| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G071600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9578570.0EU957857.1 Zea mays clone 1627284 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305803.10.0transcription factor PIL1 isoform X1
TrEMBLA0A194YHU50.0A0A194YHU5_SORBI; Uncharacterized protein
STRINGSb10g006250.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-59LJRHL1-like 3