PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G077200.1.p

Common Name

Sb10g006690, SB35P03.4, SORBIDRAFT_10g006690

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

GRF

Protein Properties

Length: 339aa MW: 35944.3 Da PI: 9.7332

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G077200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.7	1e-23	85	128	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++ + +k+CE+H+hrg+srsrk++e Sobic.010G077200.1.p 85 DPEPGRCRRTDGKKWRCSREAHGESKYCEKHIHRGKSRSRKPVE 128 79***************************************998 PP
2	QLQ	59.6	9.2e-21	12	46	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTa+Q+q+L++Q+l++Ky+a+++PvP++L+++++ Sobic.010G077200.1.p 12 LFTASQWQELEHQALIFKYMASGAPVPHDLVLPLR 46 5*******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.5E-9	11	47	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.875	12	47	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.4E-15	13	45	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.944	85	129	IPR014977	WRC domain
Pfam	PF08879	5.3E-19	86	128	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MMLSGHGGGR RLFTASQWQE LEHQALIFKY MASGAPVPHD LVLPLRLATG VDTAPSLAFP 60 PQPSPSLAYW GCYGAGAPFG RKAEDPEPGR CRRTDGKKWR CSREAHGESK YCEKHIHRGK 120 SRSRKPVEVT SPAAAAYRPS ALSISPPRAA DAPPPSLAHP HQHLRHGAAS AAAAARGAPG 180 QATAGALQLH LDASLHAASP PPSYHRYAHS HAHYTPPPSL FPGGGGGYDY GQSKELREAE 240 LRRRHFHALG ADLSLDKPLA ATAAGSAAAE KPLRRFFDEW PRESGDTRPS SWAGAEDATQ 300 LSISIPAASP SDLAASAAAR YHNGEPSGER KTPLLLVP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.4254	1e-37	root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G077200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF466199	0.0	AF466199.1 Sorghum bicolor putative receptor protein kinase, aminoalcoholphosphotransferase, putative growth-regulating factor 1, putative GAG-POL precursor, putative GAG-POL precursor, putative RIRE2 orf3, putative anthocyanin regulatory C1, putative protein T30F21.6, putative copia polyprotein, putative copia polyprotein, putative protein NP_196765.1, and gb protein genes, complete cds; and putative zinc finger protein gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002436657.2	0.0	growth-regulating factor 2
Swissprot	Q6AWY7	7e-94	GRF2_ORYSJ; Growth-regulating factor 2
TrEMBL	Q8W0U7	0.0	Q8W0U7_SORBI; Putative growth-regulating factor 1
STRING	Sb10g006690.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13992	25	27
Representative plant	OGRP460	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	6e-41	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Sobic.010G077200.1.p
Entrez Gene	8070748

Publications ? help Back to Top
Swigonov Close split of sorghum and maize genome progenitors. Genome Res., 2004. 14(10A): p. 1916-23 [PMID:15466289] Lai J, et al. Gene loss and movement in the maize genome. Genome Res., 2004. 14(10A): p. 1924-31 [PMID:15466290]