PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G090850.1.p
Common NameSb10g007890, SORBIDRAFT_10g007890
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 170aa    MW: 18376.8 Da    PI: 8.217
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G090850.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.61e-22101471128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..at 86 
                           lppG+ F+P+de  v +yL ++++g +l+++  i + d +++ Pw+L  + ++++++ +fF++ + +  +g+r++r  +  g W+  +t
  Sobic.010G090850.1.p  10 LPPGILFSPEDEVAVGHYLLPRLQGWPLPIDGLILDDDPLSAPPWELL-ERNGRKEQAFFFAEGQARCGKGTRQRRtCAGGGWWEgqKT 97 
                           79****************************999**************7.445677899******************4455666652233 PP

                   NAM  87 gkdkevlsk......kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                             + + l+       + e+ + kk + f++g       ++t Wvmhey++
  Sobic.010G090850.1.p  98 CAEGDKLRVpgcgggGIEAAWRKKAFNFHSGsgGGDGKRSTGWVMHEYAV 147
                           333333333577765556699********652144455689*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-313165IPR003441NAC domain
PROSITE profilePS5100526.4210166IPR003441NAC domain
PfamPF023654.4E-1511146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MAAAACAPGL PPGILFSPED EVAVGHYLLP RLQGWPLPID GLILDDDPLS APPWELLERN  60
GRKEQAFFFA EGQARCGKGT RQRRTCAGGG WWEGQKTCAE GDKLRVPGCG GGGIEAAWRK  120
KAFNFHSGSG GGDGKRSTGW VMHEYAVTGP EDLARSPLRL YHIRLSSYGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G090850.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438091.11e-119uncharacterized protein LOC8065510
TrEMBLA0A1W0VS291e-120A0A1W0VS29_SORBI; Uncharacterized protein (Fragment)
STRINGSb10g007890.11e-118(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Representative plantOGRP9888212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.19e-08NAC domain containing protein 4