PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G092801.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Nin-like
Protein Properties Length: 890aa    MW: 100652 Da    PI: 7.1492
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G092801.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.35.6e-27764814252
                RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           e+ +++e +s+yF++pi +AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl
  Sobic.010G092801.1.p 764 EQVLTFELVSQYFYMPIMQAARELNVGLTLLKKRCRELGIPRWPHRKMKSL 814
                           6779*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.042737IPR002885Pentatricopeptide repeat
SuperFamilySSF484529.17E-916373IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.107.8E-618269IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.1643872IPR002885Pentatricopeptide repeat
PfamPF015350.00964069IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.7E-44070IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.071103137IPR002885Pentatricopeptide repeat
PfamPF015351.0E-6105133IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.0E-4105132IPR002885Pentatricopeptide repeat
PfamPF015350.001137163IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0029137162IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.634138164IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.1165200IPR002885Pentatricopeptide repeat
PfamPF015350.17169189IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.013201231IPR002885Pentatricopeptide repeat
PfamPF015350.0044204227IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0015204227IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.073246280IPR002885Pentatricopeptide repeat
PfamPF015355.0E-4248274IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0015248277IPR002885Pentatricopeptide repeat
PfamPF015351.0E-6279303IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-5279303IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.897281307IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.107.2E-8286470IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.698308338IPR002885Pentatricopeptide repeat
PfamPF015351.2E-6310337IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.4E-6310338IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.082339373IPR002885Pentatricopeptide repeat
PfamPF130411.1E-10339386IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.7E-6341374IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.259374404IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.254408438IPR002885Pentatricopeptide repeat
PfamPF015350.13413436IPR002885Pentatricopeptide repeat
PfamPF130416.4E-11439486IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.255440474IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.8E-6442475IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.75475510IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.107.2E-8509596IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.026511541IPR002885Pentatricopeptide repeat
PfamPF015350.4515538IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.522577611IPR002885Pentatricopeptide repeat
PROSITE profilePS5151918.69751834IPR003035RWP-RK domain
PfamPF020423.8E-21767814IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016554Biological Processcytidine to uridine editing
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MDQADSLVRQ HNRSLMGLLR RGRFSAARRL FDALPARSVV TWNSFLAALS RRRDVRAARS  60
FFDAMPMRDI ISWNTLLAAY ARSLQPDHLA AARRLFDEMP QRDAVSWSTL LGAYTRRGLM  120
EEAQRLFDEM PHRNPASWNT MVTGFFAIGQ MRKALNVFEA MPVKDSASLS AMVSGFIRNG  180
WLHEADELLT KRLRAMDMDK AVDAFNTLIA AYGQTGRVTD ARRLFSMIPK TQSQHKGHKR  240
RVFERNVVSW NSMMMCYIRT GDVCSARALF DEMPFKDLVT WNTMIAGYTQ ASDMEEAEKL  300
FGEVPAPDAV TWNLMIRGFT QKGDVEHARG FFDRMPEQST ITWNTMISGY EQNEDYDCTI  360
KLFQRMLEVG ERPDPHTFSS VLAACASLAM LRLGAQLHQL IEKSFLPDTA TNNALMTMYS  420
RCGELTSAKA IFSQMHTQKD LVSWNALIGG YEHHGNATEA LRLFQEMRSA KVMPTHITFI  480
SLLSACGNAG LVSEGQVVFH TMVHEYGLAP RVEHYAALVN LIGRHGQLED ALEVIKSMPI  540
APDRAVWGAF LGACTAKKNE VLAAVAANAL SKIDPESSAP YVLMHNLHAH EGRWGSASVV  600
REDMERLGIH KHPGYSWIDL HDKVHVFISG DTSHPLTQEI FSVLECFYSS LWPYWTGAWP  660
DSHLLEEEAL LSGLSLPSLH FHPSCSTITS TNILQGELDA IFEDDVLRHW DDMELQSGNK  720
VEEEAGNERL PLLCYTEEEK EAVSSNNKVV VRAAGQQAVR SPEEQVLTFE LVSQYFYMPI  780
MQAARELNVG LTLLKKRCRE LGIPRWPHRK MKSLQSLIKN VQVLQEAGKA TDEEQLRALV  840
EMLQQEKQLL EQRPYEQLDE KTKRLRQACF KANYKKKRLL ALKGGEAPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A4e-5286102429pentatricopeptide repeat protein dPPR-U10
5iww_D5e-53225614338PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G092801.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305444.10.0pentatricopeptide repeat-containing protein At1g62260, mitochondrial
TrEMBLA0A194YI520.0A0A194YI52_SORBI; Uncharacterized protein
STRINGPavir.Da01160.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108991212
Representative plantOGRP344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.11e-35RWP-RK domain-containing protein