PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G096300.1.p
Common NameSb10g008400, SORBIDRAFT_10g008400
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 467aa    MW: 50071.5 Da    PI: 4.8283
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G096300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.41.4e-27189243156
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           k++++Wtp+LH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++
  Sobic.010G096300.1.p 189 KAKVDWTPDLHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 243
                           6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.334186245IPR017930Myb domain
SuperFamilySSF466894.3E-18187246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-27187246IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-26189243IPR006447Myb domain, plants
PfamPF002492.2E-7192241IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MCADVEECGG AAAGIKEMEE IAVGPVSDLD FDFTVDDIDF GDFFLRLDDD DRDALPDLEV  60
DPAEIFITDF EAIATGAGHG GVMDQEVPSV LPLADAVHIG AVDVDVDPCC PGVLGGEEDN  120
VTTCEDVEEG KGECNDDHAE GEEVVAGNGD SGEGGCGTVL GEKSPSSTTS QEAESRHKSS  180
NKHSHGKKKA KVDWTPDLHR RFVQAVEQLG IDKAVPSRIL EIMGIDSLTR HNIASHLQKY  240
RSHRKHMLAR EVEAATWTHR RQMYAAGGAP NGVKRPDSNA WTVPTIGFPP PPPPPPPPPP  300
PSPHPMQHFG RPLHVWGHPT PTVESPRVPM WPRHLVPRTP PPPWAPPPPS DPAFWHHAYM  360
RGPAHMPGQV TPCVAVPMPA ARFPAPPVRG ALPCPPPMYR PLVPPTLDTQ FQLQTQPSSE  420
SIDAAIGDVL TKPWLPLPLG LKPPSVDSVM GELQRQGVAN VPPACG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16186241257ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.81180.0leaf| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G096300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3185801e-100AF318580.1 Zea mays putative transcription factor ZmGLK1 (Glk1) mRNA, complete cds.
GenBankBT0552201e-100BT055220.1 Zea mays full-length cDNA clone ZM_BFc0139J21 mRNA, complete cds.
GenBankKJ7268181e-100KJ726818.1 Zea mays clone pUT3357 G2-like transcription factor (GLK57) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436765.10.0probable transcription factor GLK1
SwissprotQ5Z5I41e-150GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLC5Z7F70.0C5Z7F7_SORBI; Uncharacterized protein
STRINGSb10g008400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Representative plantOGRP28401529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-59GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]