PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G110100.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 451aa MW: 48787 Da PI: 6.8341

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G110100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.9e-10	157	200	2	45
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ++ k++rr+++NReAAr+sR RKka+i eLe+ +L + ++L Sobic.010G110100.1.p 157 RDHKAQRRLAQNREAARKSRMRKKAYIVELENSRSKLAQLEQEL 200 6789***************************9777776665544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.2E-9	152	202	No hit	No description
SMART	SM00338	5.0E-7	156	219	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	158	202	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.4E-7	158	200	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.20E-20	160	212	No hit	No description
SuperFamily	SSF57959	1.38E-7	160	203	No hit	No description
PROSITE pattern	PS00036	0	163	178	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.6E-29	242	317	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MHPHQPSHAF SYWVEQGAGG GYRHVGDGAT ILLPELQRSP NPSSKSSSSL SAAATFAPPL 60 AAAAHGGVAA VPFGMVPPGV ATADDARFCM PWATPAHFEN WGDSGIVVTS PLAETASTDV 120 DDVSGGNHHH DAHMGVAITR SVDGHENSLP VCKVESRDHK AQRRLAQNRE AARKSRMRKK 180 AYIVELENSR SKLAQLEQEL QRARQQGMFI ASGRSGDHGG STGGALAFDL EYARWLDEHQ 240 HHMNDLRVAL SAQIGDDDLG VLVDGVMLHY DEMFRLKGVA TRTDVFHVLS GMWMSPAERF 300 FMWLGGFRSS ELLKVVARQV EPQLTEQQLV GICSLQQSLQ QAEDALSQGM EALQQGLGDT 360 LAAAAPAAPG PSASAADSVT NYMGQMAVAM SKLATVENFL RQADLLRQQT LKQVHRILTT 420 RQAARALLVV SDYFSRLRAL SSLWLTRPTD *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MHPHQPSHAF SYWVEQGAGG GYRHVGDGAT ILLPELQRSP NPSSKSSSSL SAAATFAPPL  60
AAAAHGGVAA VPFGMVPPGV ATADDARFCM PWATPAHFEN WGDSGIVVTS PLAETASTDV  120
DDVSGGNHHH DAHMGVAITR SVDGHENSLP VCKVESRDHK AQRRLAQNRE AARKSRMRKK  180
AYIVELENSR SKLAQLEQEL QRARQQGMFI ASGRSGDHGG STGGALAFDL EYARWLDEHQ  240
HHMNDLRVAL SAQIGDDDLG VLVDGVMLHY DEMFRLKGVA TRTDVFHVLS GMWMSPAERF  300
FMWLGGFRSS ELLKVVARQV EPQLTEQQLV GICSLQQSLQ QAEDALSQGM EALQQGLGDT  360
LAAAAPAAPG PSASAADSVT NYMGQMAVAM SKLATVENFL RQADLLRQQT LKQVHRILTT  420
RQAARALLVV SDYFSRLRAL SSLWLTRPTD *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G110100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT085145	0.0	BT085145.1 Zea mays full-length cDNA clone ZM_BFb0304K15 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002438208.2	0.0	transcription factor TGAL3
Swissprot	Q5Z6N9	1e-171	TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBL	A0A194YIE5	0.0	A0A194YIE5_SORBI; Uncharacterized protein
STRING	GRMZM2G133331_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-103	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.010G110100.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]