PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G110100.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 463aa    MW: 50093.6 Da    PI: 6.8319
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G110100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15e-10169212245
                           XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                           ++ k++rr+++NReAAr+sR RKka+i eLe+   +L +  ++L
  Sobic.010G110100.2.p 169 RDHKAQRRLAQNREAARKSRMRKKAYIVELENSRSKLAQLEQEL 212
                           6789***************************9777776665544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.4E-9164214No hitNo description
SMARTSM003385.0E-7168231IPR004827Basic-leucine zipper domain
PfamPF001704.6E-7170212IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438170214IPR004827Basic-leucine zipper domain
CDDcd147082.53E-20172224No hitNo description
SuperFamilySSF579591.55E-7172215No hitNo description
PROSITE patternPS000360175190IPR004827Basic-leucine zipper domain
PfamPF141441.0E-28254329IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MHPHQPSHAF SYWVEQGAGG GYRHVGDGAT ILLPELQRSP NPSSKSSSSL SAAATFAPPL  60
AAAAALSLSL FVCLMQHGGV AAVPFGMVPP GVATADDARF CMPWATPAHF ENWGDSGIVV  120
TSPLAETAST DVDDVSGGNH HHDAHMGVAI TRSVDGHENS LPVCKVESRD HKAQRRLAQN  180
REAARKSRMR KKAYIVELEN SRSKLAQLEQ ELQRARQQGM FIASGRSGDH GGSTGGALAF  240
DLEYARWLDE HQHHMNDLRV ALSAQIGDDD LGVLVDGVML HYDEMFRLKG VATRTDVFHV  300
LSGMWMSPAE RFFMWLGGFR SSELLKVVAR QVEPQLTEQQ LVGICSLQQS LQQAEDALSQ  360
GMEALQQGLG DTLAAAAPAA PGPSASAADS VTNYMGQMAV AMSKLATVEN FLRQADLLRQ  420
QTLKQVHRIL TTRQAARALL VVSDYFSRLR ALSSLWLTRP TD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G110100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0851450.0BT085145.1 Zea mays full-length cDNA clone ZM_BFb0304K15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438208.20.0transcription factor TGAL3
SwissprotQ5Z6N91e-170TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A1W0VSD70.0A0A1W0VSD7_SORBI; Uncharacterized protein
STRINGGRMZM2G133331_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-103TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]