PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G115450.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

GRAS

Protein Properties

Length: 174aa MW: 18987.7 Da PI: 7.415

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G115450.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	21.8	2e-07	70	167	197	290
GRAS 197 kpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflea...leyysalfdsleaklprese 280 +p+ +l+V + ++l++l d+++ ++ + d+vL +++++ +++++ + + ++sFl+rf + ++ alfd l+a l+ se Sobic.010G115450.1.p 70 DPDMVLVVDSLFKLETLADDNLVMDRasPLDSVLGNIRRMRQAMFTHSVVNGLC-GNSFLTRFRPSgrrSSTSQALFDVLDAMLSWGSE 157 457789************9988776699*************9999888.679*987222567789************ PP GRAS 281 erikvErell 290 + +++E+ + Sobic.010G115450.1.p 158 QCRVLEQDVC 167 *999999854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	6.8E-5	70	167	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MADEAAMSNS KEARRRSHAH AAGELRAGGG RAVCIADVGR LQRLAHCFVE ALEAREVAVA 60 RWDAVRVGRD PDMVLVVDSL FKLETLADDN LVMDRASPLD SVLGNIRRMR QAMFTHSVVN 120 GLCGNSFLTR FRPSGRRSST SQALFDVLDA MLSWGSEQCR VLEQDVCVVN VVT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G115450.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002450074.1	9e-37	scarecrow-like protein 34
TrEMBL	A0A1W0VSG6	1e-121	A0A1W0VSG6_SORBI; Uncharacterized protein
STRING	Sb10g010016.1	2e-73	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	2e-06	GRAS family protein

Link Out ? help Back to Top
Phytozome	Sobic.010G115450.1.p