PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G123500.3.p
Common NameSb10g010860, SORBIDRAFT_10g010860
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family DBB
Protein Properties Length: 297aa    MW: 31515.7 Da    PI: 4.1287
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G123500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.7e-07445540
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                           C+ ++e++   +C+++   lC +C  + H+       Ht++
  Sobic.010G123500.3.p  4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                          6*****************************657888889876 PP
2zf-B_box23.21.4e-074789541
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           C+++ ++++   C   +  lC++C  ++H        H++++
  Sobic.010G123500.3.p 47 LCDRCASQPAMVRCLAENASLCQNCDWNGHIAgssaagHKRQT 89
                          7*****************************3256677788765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.94147IPR000315B-box-type zinc finger
SMARTSM003361.0E-10147IPR000315B-box-type zinc finger
CDDcd000211.42E-7447No hitNo description
PROSITE profilePS501199.1154390IPR000315B-box-type zinc finger
CDDcd000211.99E-54790No hitNo description
SMARTSM003360.214890IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
LAENASLCQN CDWNGHIAGS SAAGHKRQTI NCYSGCPSSA ELSRIWSFVS DIPNVAPEPN  120
CEQGISMMSI SDSGVSSQDN AAGDNNLLDI ASETLISDLG TCDKPLVGSS SGAGVNLLPL  180
ATDQTAGSVD SPPDKDSCVQ VPYTPDKDMF SKDSIYEDFC VDDVDLAFEN YEELFGTSHI  240
QTEQLFDDAG IDSYFEVKEA PAGNSTEQSK LKQPANSNAV SADSGMSNPG VKASWP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G123500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9627670.0EU962767.1 Zea mays clone 245350 CCT motif family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304179.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
TrEMBLA0A1W0VSK90.0A0A1W0VSK9_SORBI; Uncharacterized protein
STRINGSb10g010860.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.16e-72B-box type zinc finger protein with CCT domain