PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G124400.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 140aa MW: 16380.8 Da PI: 9.624

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G124400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.9	3e-22	50	130	1	82
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +fYn+YA+ GFs+r+s+s++ k++++i+++tf+Cs++g ++k+++e+++ ++++tr+ C+a++k++++ dg ++++++e Sobic.010G124400.1.p 50 DFYNAYARAKGFSIRRSSSHNVKNTTTIKNKTFCCSRQGIWGPDKREEESSNCSKPKTRCMCQARMKISLR-DGFYYIYEFE 130 6********************************************999999**************.*****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-17	50	130	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MISYILLWIS FHFRSHQHPG KTESTQVENF LECKTPKIRI KFCSEQEGYD FYNAYARAKG 60 FSIRRSSSHN VKNTTTIKNK TFCCSRQGIW GPDKREEESS NCSKPKTRCM CQARMKISLR 120 DGFYYIYEFE PIAQAKHII*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G124400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020673878.1	2e-26	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_020673879.1	2e-26	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_020673880.1	2e-26	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_020673883.1	2e-26	protein FAR1-RELATED SEQUENCE 7 isoform X2
Refseq	XP_028549732.1	2e-26	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_028549733.1	2e-26	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_028549734.1	2e-26	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_028549735.1	2e-26	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_028549736.1	2e-26	protein FAR1-RELATED SEQUENCE 7 isoform X2
Refseq	XP_028549737.1	3e-26	protein FAR1-RELATED SEQUENCE 7 isoform X3
Refseq	XP_028549738.1	2e-26	protein FAR1-RELATED SEQUENCE 7 isoform X4
TrEMBL	A0A194YJR4	1e-100	A0A194YJR4_SORBI; Uncharacterized protein
STRING	Pavir.Hb01264.1.p	7e-52	(Panicum virgatum)
STRING	Pavir.J15432.1.p	1e-49	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	8e-08	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Sobic.010G124400.1.p