PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G147000.1.p
Common NameSb10g019660, SORBIDRAFT_10g019660
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CPP
Protein Properties Length: 510aa    MW: 56257.2 Da    PI: 7.3362
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G147000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.33.6e-1468107141
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                           k+kk+CnCk+s+Clk+YCeCfaag +C+  C+C++C N+ e
  Sobic.010G147000.1.p  68 KKKKHCNCKNSQCLKLYCECFAAGDYCDG-CNCKQCGNTVE 107
                           589**************************.********987 PP
2TCR50.63.8e-16152191140
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  Sobic.010G147000.1.p 152 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNYE 191
                           589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-1468108IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.06369192IPR005172CRC domain
PfamPF036385.6E-1170105IPR005172CRC domain
SMARTSM011144.4E-19152193IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.2E-12155190IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MEEEKQQAEP PALVPEAVAE PRAAPQLQQQ PKPAVQVQPS MPVLRPWPME ITLSMKPVVE  60
MKSGTPAKKK KHCNCKNSQC LKLYCECFAA GDYCDGCNCK QCGNTVENEK GRQDAINNTK  120
LRNPNAFQPK IENGPIPPSV RKDAGALPSL PKHNKGCHCK KSGCLKKYCE CFQANILCSK  180
NCKCMDCKNY EGSEELRSTI QGDNSCDRNN LQQAANVALN GAIGSSGYRF SPVRRKRPAE  240
DPHYQRLNVE GSMMQTQFQE ANNVDVSQIT SSTGRDGSTG NFQGRSKLVY RSPLANTIHV  300
TDVNDLANHL VIVCRKAAER FTTIVDNKAE MEIDREICTN TYQKFDENKD VQKDALSQLG  360
KVTNIDQQIV DDSILYCSDT QEDARPASPG TQALLCDEQD LTFGTAHRSP IPIALHDQDI  420
SELHAAQENA VLKEFRNYLR LIIARGKINA EGKSSSGTGM ETDAPRHHES STSLAPVRTE  480
EKTNTTDDPE DPKTSRSFAS NGISTHKLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-27632014132Protein lin-54 homolog
5fd3_B7e-27632014132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G147000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0617080.0BT061708.1 Zea mays full-length cDNA clone ZM_BFb0176J22 mRNA, complete cds.
GenBankKJ7280220.0KJ728022.1 Zea mays clone pUT6158 CPP transcription factor (CPP12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438440.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLC5Z3600.0C5Z360_SORBI; Uncharacterized protein
STRINGSb10g019660.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-82Tesmin/TSO1-like CXC domain-containing protein