PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G148100.1.p
Common NameSb10g019770, SORBIDRAFT_10g019770
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 216aa    MW: 23300.6 Da    PI: 10.5957
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G148100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.27.8e-171958241
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                          rie k  rqvt +kR+ g+lKKA+EL  LC+a vavi+f 
  Sobic.010G148100.1.p 19 RIEKKESRQVTQCKRKGGLLKKASELHLLCGAHVAVIVFK 58
                          8*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.1521060IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-201072IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-191161IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-141232IPR002100Transcription factor, MADS-box
PfamPF003193.2E-181960IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-143247IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-144768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVKPGKKTSR GRQKIEIRRI EKKESRQVTQ CKRKGGLLKK ASELHLLCGA HVAVIVFKRT  60
EPEGKEVAVA PRGKRDDGGG GGIAFAMGTP SVDHVLRLLH ADEGRLTALQ QDVGAVAAER  120
AVTEARARET EQTRALVEAE KARNDAIGEK VLQAVEVSGR RFWWEVDVGV LGEAELPVFT  180
SQLQRLRDSV QLQANRSQTS ATPGGGGAAP WQQLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G148100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276720.0KJ727672.1 Zea mays clone pUT5599 MADS transcription factor (MADS47) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437052.11e-152agamous-like MADS-box protein AGL61
TrEMBLC5Z3G81e-151C5Z3G8_SORBI; Uncharacterized protein
STRINGSb10g019770.11e-152(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Representative plantOGRP2001522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-16AGAMOUS-like 62