PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G148400.1.p
Common NameSb10g019790, SORBIDRAFT_10g019790
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20360.1 Da    PI: 8.7799
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G148400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.71.5e-08754249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          ri+n+ +r   f kRr +++  A  +S   +a vav+ fs+tg+ + +
  Sobic.010G148400.1.p  7 RIDNEEQRRSCFRKRRPTLFTMARDISEEFGAHVAVVAFSPTGEAHAF 54
                          8******************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-4157IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.638458IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-13469IPR002100Transcription factor, MADS-box
PfamPF003197.8E-14754IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MVRELRRIDN EEQRRSCFRK RRPTLFTMAR DISEEFGAHV AVVAFSPTGE AHAFGGPTVD  60
SVLRTHLPAD GASSHPPFPS LDAAAETAGE ATARVAGLRR DGEETKALVA KEWARVAATR  120
EKVKTAQATA QKKNWWEVDA EALGEEELPV FIRALELLKS DVKGRVDVVT SSRLNLPCRE  180
KKQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G148400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438447.11e-131agamous-like MADS-box protein AGL61
TrEMBLC5Z3H01e-130C5Z3H0_SORBI; Uncharacterized protein
STRINGSb10g019790.11e-131(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7989512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-11AGAMOUS-like 62