PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G148600.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 386aa    MW: 41695.7 Da    PI: 6.4381
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G148600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.31.5e-23174230359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D ++WrKYGqK++k++++ rsYYrC++  +C+++k+v+r+   ++++ + Y geH h+
  Sobic.010G148600.2.p 174 DSWAWRKYGQKSIKDTPYHRSYYRCSTDkKCKARKHVQRCL-TQSFLAVSYIGEHSHP 230
                           99***********************9998************.899************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-25159232IPR003657WRKY domain
SuperFamilySSF1182909.81E-22166232IPR003657WRKY domain
PROSITE profilePS5081122.951167232IPR003657WRKY domain
SMARTSM007741.9E-27172231IPR003657WRKY domain
PfamPF031068.1E-21174230IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDDGRDGNNW DLNAVLRSGC HGPMPPPPPP PTRTANNPVA RYAPPPPAQP SYAFTVLAGG  60
LGHQAISVLP QPQALDQDPP HAAGRGPSLD LPLLPEPDYT AAVGNTPAPL NPPWPRNEIP  120
VPSVQQRPAD KHKTPPSSGC DAAEGSSRSK KRDNRTTKES KVVLVLAEDP TPPDSWAWRK  180
YGQKSIKDTP YHRSYYRCST DKKCKARKHV QRCLTQSFLA VSYIGEHSHP MPLARNGQAG  240
TTHQKPPPRQ PTSPFIRTPA KEDQPHHQAP APPPATSSSP FAMISAAKQT PAPPAALLPP  300
PSVEFDNEKD DDAVAVRMLL NDMDMTPEDA LKFVNPEEEP LDGVGDDLLI PTPEELAPFY  360
YGDEENMLYP MASEPASGGS RNTKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-12157232379Disease resistance protein RRS1
5w3x_D2e-12157232379Disease resistance protein RRS1
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G148600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305538.10.0extensin-like
TrEMBLA0A1W0VT450.0A0A1W0VT45_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2773445
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-25WRKY family protein